Genomics

The Genomics Unit offers medium- and large-scale sequencing and genotyping services, providing technical and methodological advising as both an internal service to researchers who temporarily access its facilities and as an external service to national and international public and private institutions

Services

- Methylation and hydroxymethylation analysis

- Scientific-methodological advising on experiment design, choice, and optimization of genomic analysis techniques

- Nucleic acid extraction

- Quantification of nucleic acids (NANODROP 2000, Qubit)

- Amplification and electrophoresis

- Reverse transcription reaction

- Genotyping and genetic expression studies (qPCR, Pyrosequencer)

- Methylation and hydroxymethylation analysis

- Microbiota analysis (16S rRNA)

- Allele quantification (pyrosequencing)

- Duplicated qPCR

- Next-Generation Sequencing (NGS)

- NGS library construction

- ARRAYS (expression, SNPs)

Equipment

All nodes have refrigerators for reagents and samples, freezers (-20ºC, -80ºC), flow hoods with extraction and UV, centrifuges, end-point thermocyclers, and a nucleic acid quantifier

    • IBIMA Plataforma BIONAND Building at the Malaga TechPark
    • Fluorimetro Biotek Synergy MX
    • Qubit 4
    • Nanodrop 2000C
    • QIAamplifier 96, Qiagen
    • Termociclador Bio-rad
    • CFX 96 Real TIme System, Bio-Rad
    • MyCycler gradient, Bio-Rad
    • QuantStudio 12K Flex bloque arrays
    • QuantStudio 12K Flex bloque 384
    • PyroMark Q48 Autoprep
    • Ion Chef System
    • Ion Torrent S5
    • Avant Genetic Analyzer 3130XL, Applied Biosystems

      Virgen de la Victoria University Hospital Research Laboratory

      • QuantStudio 6 (necessary training for their use)

      Civil Hospital Research Laboratory

      • Maxwell Robot (nucleic acid extraction)

      • Robot QiaCube (nucleic acid extraction)
      • Qubit Spectrophotometer

      • Fluorimeter quantification of nucleic acids (FLx800)

      • Thermocyclers

      • Mastercycler gradient, Eppendorf

      • Veriti 96-Well Thermal Cycler, Applied Biosystems
      • The LightCycler® 480 Instrument II, Roche Diagnostics

      • 7500 Fast Real-Time PCR System, Thermo Fisher Scientific
      • PyroMark Q96 ID, Qiagen

      Rates

      Contact

      Daniel Alameda Serrano

      Coordinator

      Contacto: 628 99 77 35 | dalameda@ibima.eu | genomica@ibima.eu 

      Isabel Moreno Indias

      Scientific Coordinator

      Contact: 952 36 76 12 | Isabel.moreno@ibima.eu | genomica@ibima.eu