Gestión, Integración y Análisis de datos y de Conocimiento (KHAOS)

Lineas de Investigación

01. (Big) Data Analytics (Gestión Integración y Análisis de Datos y del Big Data).

02. Gestión de datos clínicos.

03. Historia clínica electrónica.




Publicaciones científicas

  • Todo
  • D1
  • Q1
  • Q2
  • Otro
A Tutorial On the design, experimentation and application of metaheuristic algorithms to real-World optimization problems

Osaba, E; Villar-Rodriguez, E; Del Ser, J; Nebro, AJ; Molina, D; LaTorre, A; Suganthan, PN; Coello, CAC; Herrera, LEF SWARM AND EVOLUTIONARY COMPUTATION 2021

FIMED: Flexible management of biomedical data

Hurtado S, García-Nieto J, Navas-Delgado I, Aldana-Montes JF Computer methods and programs in biomedicine 2021 Nov;212():106496

Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models

Juanes Cortés B, Vera-Ramos JA, Lovering RC, Gaudet P, Laegreid A, et al. Biochimica et biophysica acta. Gene regulatory mechanisms 2021 Nov-Dec;1864(11-12):194766

Injecting domain knowledge in multi-objective optimization problems: A semantic approach

Barba-Gonzalez, C; Nebro, AJ; Garcia-Nieto, J; Roldan-Garcia, MD; Navas-Delgado, I; Aldana-Montes, JF COMPUTER STANDARDS & INTERFACES 2021

Merge Nondominated Sorting Algorithm for Many-Objective Optimization

Moreno J, Rodriguez D, Nebro AJ, Lozano JA IEEE transactions on cybernetics 2021 Dec;51(12):6154-6164

Ontology-driven approach for KPI meta-modelling, selection and reasoning

Roldan-Garcia, MD; Garcia-Nieto, J; Mate, A; Trujillo, J; Aldana-Montes, JF INTERNATIONAL JOURNAL OF INFORMATION MANAGEMENT 2021

Reconstruction of gene regulatory networks with multi-objective particle swarm optimisers

Hurtado, S; Garcia-Nieto, J; Navas-Delgado, I; Nebro, AJ; Aldana-Montes, JF APPLIED INTELLIGENCE 2021

TITAN: A knowledge-based platform for Big Data workflow management

Benitez-Hidalgo, A; Barba-Gonzalez, C; Garcia-Nieto, J; Gutierrez-Moncayo, P; Paneque, M; Nebro, AJ; Roldan-Garcia, MD; Aldana-Montes, JF; Navas-Delgado, I KNOWLEDGE-BASED SYSTEMS 2021

On the design of a framework integrating an optimization engine with streaming technologies

Barba-Gonzalez, C; Nebro, AJ; Benitez-Hidalgo, A; Garcia-Nieto, J; Aldana-Montes, JF FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE 2020

Optimizing ligand conformations in flexible protein targets: a multi-objective strategy

Lopez-Camacho, E; Garcia-Godoy, MJ; Garcia-Nieto, J; Nebro, AJ; Aldana-Montes, JF SOFT COMPUTING 2020

Qom-A New Hydrologic Prediction Model Enhanced with Multi-Objective Optimization

Zavala, GR; Garcia-Nieto, J; Nebro, AJ APPLIED SCIENCES-BASEL 2020

Sequoya: multiobjective multiple sequence alignment in Python

Benítez-Hidalgo A, Nebro AJ, Aldana-Montes JF Bioinformatics (Oxford, England) 2020 Jun 1;36(12):3892-3893

A novel multi-objective evolutionary algorithm with fuzzy logic based adaptive selection of operators: FAME

Santiago, A; Dorronsoro, B; Nebro, AJ; Durillo, JJ; Castillo, O; Fraire, HJ INFORMATION SCIENCES 2019

Analyze, Sense, Preprocess, Predict, Implement, and Deploy (ASPPID): An incremental methodology based on data analytics for cost-efficiently monitoring the industry 4.0

Para, J; Del Ser, J; Nebro, AJ; Zurutuza, U; Herrera, F ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE 2019

BIGOWL: Knowledge centered Big Data analytics

Barba-Gonzalez, C; Garcia-Nieto, J; Roldan-Garcia, MD; Navas-Delgado, I; Nebro, AJ; Aldana-Montes, JF EXPERT SYSTEMS WITH APPLICATIONS 2019

Bio-inspired optimization for the molecular docking problem: State of the art, recent results and perspectives

Garcia-Godoy, MJ; Lopez-Camacho, E; Garcia-Nieto, J; Del Serb, J; Nebro, AJ; Aldana-Montes, JF APPLIED SOFT COMPUTING 2019

Inference of gene regulatory networks with multi-objective cellular genetic algorithm

García-Nieto J, Nebro AJ, Aldana-Montes JF Computational biology and chemistry 2019 Jun;80():409-418

jMetalPy: A Python framework for multi-objective optimization with metaheuristics

Benitez-Hidalgo, A; Nebro, AJ; Garcia-Nieto, J; Oregi, I; Del Ser, J SWARM AND EVOLUTIONARY COMPUTATION 2019

Multi-objective ligand-protein docking with particle swarm optimizers

Garcia-Nieto, J; Lopez-Camacho, E; Garcia-Godoy, MJ; Nebro, AJ; Aldana-Montes, JF SWARM AND EVOLUTIONARY COMPUTATION 2019

Tool for materializing OWL ontologies in a column-oriented database

Reyes-Alvarez, L; Roldan-Garcia, MD; Aldana-Montes, JF SOFTWARE-PRACTICE & EXPERIENCE 2019

VIGLA-M: visual gene expression data analytics

Navas-Delgado, I; Garcia-Nieto, J; Lopez-Camacho, E; Rybinski, M; Lavado, R; Guerrero, MAB; Aldana-Montes, JF BMC BIOINFORMATICS 2019

InDM2: Interactive Dynamic Multi-Objective Decision Making Using Evolutionary Algorithms

Nebro, AJ; Ruiz, AB; Barba-Gonzalez, C; Garcia-Nieto, J; Luque, M; Aldana-Montes, JF SWARM AND EVOLUTIONARY COMPUTATION 2018

jMetalSP: A framework for dynamic multi-objective big data optimization

Barba-Gonzalez, C; Garcia-Nieto, J; Nebro, AJ; Cordero, JA; Durillo, JJ; Navas-Delgado, I; Aldana-Montesa, JF APPLIED SOFT COMPUTING 2018

Towards an ontology-driven clinical experience sharing ecosystem: Demonstration with liver cases

Roldan-Garcia, MD; Uskudarli, S; Marvasti, NB; Acar, B; Aldana-Montes, JF EXPERT SYSTEMS WITH APPLICATIONS 2018

Biological Web Service Repositories Review

Urdidiales-Nieto D, Navas-Delgado I, Aldana-Montes JF Molecular informatics 2017 May;36(5-6):

M2Align: parallel multiple sequence alignment with a multi-objective metaheuristic

Zambrano-Vega C, Nebro AJ, García-Nieto J, Aldana-Montes JF Bioinformatics (Oxford, England) 2017 Oct 1;33(19):3011-3017

Multiple Sequence Alignment with Multiobjective Metaheuristics. A Comparative Study

Zambrano-Vega, C; Nebro, AJ; Durillo, JJ; Garcia-Nieto, J; Aldana-Montes, JF INTERNATIONAL JOURNAL OF INTELLIGENT SYSTEMS 2017

An ontology-based data integration approach for web analytics in e-commerce

Garcia, MDR; Garcia-Nieto, J; Aldana-Montes, JF EXPERT SYSTEMS WITH APPLICATIONS 2016

Dione: An OWL representation of ICD-10-CM for classifying patients’ diseases

Roldán-García MD, García-Godoy MJ, Aldana-Montes JF Journal of biomedical semantics 2016 Oct 13;7(1):62

Molecular Docking Optimization in the Context of Multi-Drug Resistant and Sensitive EGFR Mutants

García-Godoy MJ, López-Camacho E, García-Nieto J, Nebro AJ, Aldana-Montes JF Molecules (Basel, Switzerland) 2016 Nov 19;21(11):

MO-Phylogenetics: a phylogenetic inference software tool with multi-objective evolutionary metaheuristics

Zambrano-Vega, C; Nebro, AJ; Aldana-Montes, JF METHODS IN ECOLOGY AND EVOLUTION 2016

tESA: a distributional measure for calculating semantic relatedness

Rybinski M, Aldana-Montes JF Journal of biomedical semantics 2016 Dec 28;7(1):67

kpath: integration of metabolic pathway linked data

Navas-Delgado I, García-Godoy MJ, López-Camacho E, Rybinski M, Reyes-Palomares A, et al. Database : the journal of biological databases and curation 2015;2015():bav053

Solving molecular flexible docking problems with metaheuristics: A comparative study

Lopez-Camacho, E; Garcia-Godoy, MJ; Garcia-Nieto, J; Nebro, AJ; Aldana-Montes, JF Applied Soft Computing 2015


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